RnoEX0057371 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82064229-82067843:+
Coord C1 exon
chr8:82064229-82064310
Coord A exon
chr8:82065068-82065155
Coord C2 exon
chr8:82067737-82067843
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCTTTGCTGTAGGAA
3' ss Score
12.23
5' ss Seq
CAGGCAGGC
5' ss Score
2.12
Exon sequences
Seq C1 exon
GCAGAAGAGGAGAGAAACTACCATATCTTCTATCAGCTCTGTGCTTCGGCAAAGCTACCTGAGTTTAAGATGCTGCGGTTAG
Seq A exon
GAAATGCAGATAGTTTCCATTACACGAAGCAAGGAGGCAGCCCTATGATAGAAGGAGTGGACGATGCGAAGGAGATGGCACACACCAG
Seq C2 exon
GAATTAGTGAATCTTACCAAATGGGAATTTTTCGGATACTTGCTGGCATTCTTCACTTAGGCAATGTTGGGTTTGCGTCTCGAGATTCAGACAGCTGCACAATACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'12-15,'12-14,13-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAGGAGAGAAACTACCA
R:
ATCTCGAGACGCAAACCCAAC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]