DreEX0048698 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:38979318-38988408:+
Coord C1 exon
chr18:38979318-38979399
Coord A exon
chr18:38986070-38986177
Coord C2 exon
chr18:38988302-38988408
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTTTCTCTGCAGGAA
3' ss Score
12.86
5' ss Seq
TAGGTCAGA
5' ss Score
4.42
Exon sequences
Seq C1 exon
GCGGATGAAGAGAGGAATTATCATATCTTCTATCAGCTCTGTGCATCGGCTCACCTCCCGGAGTTTAAAGCCCTGAAACTCG
Seq A exon
GAAAGGCTAATGATTTCCACTACACAAAACAGGGCAGGAATCCAGTCATAGATGGAGTAGATGATGCCAAGGAGATGTCTACCACCAGGAACGCCTTCATACTGCTAG
Seq C2 exon
GTATAAATGAGTCCTATCAGATGGGCTTGTTTCAGATATTGGCTTCCATTTTGCACCTTGGAAATGTAGACGTGAAGGATAGAGACTCGGACAGCAGTATTATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.028
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATGAAGAGAGGAATTATCA
R:
TGGAATAATACTGCTGTCCGAGT
Band lengths:
189-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]