GgaEX0006270 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8283113-8285178:+
Coord C1 exon
chr10:8283113-8283194
Coord A exon
chr10:8284491-8284598
Coord C2 exon
chr10:8285072-8285178
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGTTAGTTTTTGTCTTACAGGGA
3' ss Score
6.76
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GCAGAAGAGGAGAGAAATTACCACATCTTTTACCAACTCTGTGCCTCTGCAGCATTACCTGAATTTAAAACTCTACGATTAG
Seq A exon
GGAATGCAAATTACTTTCATTATACAAAGCAAGGTGGAAGCCCTGTGATTGATGGCATTGATGATGCTAAGGAAATGGTAAACACCAGACAAGCCTGCACTTTGCTAG
Seq C2 exon
GGATTAGTGATTCCTACCAGATGGGAATTTTCCGAATCCTTGCTGGCATCCTTCACTTGGGCAACGTGGAGTTTGCATCTCGGGATTCTGACAGCTGCGCCATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAGGAGAGAAATTACCACA
R:
GCAGCTGTCAGAATCCCGAGA
Band lengths:
180-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]