BtaEX6053665 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58258441-58264261:+
Coord C1 exon
chr10:58258441-58258595
Coord A exon
chr10:58261135-58261224
Coord C2 exon
chr10:58264111-58264261
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTTGGTTTTTTTTTTAAGGAA
3' ss Score
9.35
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACCTGAAGCCCCGCGGTGTGGTGGTGAACATGATCCCCGGGCTGCCGGCTCATATCCTGTTCATGTGTGTACGCTACGCAGACTCTCTAAATGACGCCGACATGCTCAAGTCCCTCATGAACAGCACCATTAATGGCATCAAGCAGGTGGTTAAG
Seq A exon
GAACATTTAGAAGACTTTGAGATGCTGTCCTTTTGGCTTTCCAATACCTGTCATTTCCTCAATTGCCTGAAGCAGTACAGTGGAGAAGAG
Seq C2 exon
GAATTCATGAAGCATAATAGTCCACATCAGAATAAGAATTGCTTGAACAATTTTGACCTTTCAGAATACAGACAGATTCTTAGTGATGTGGCTATACGAATATATCATCAGTTCGTTATCGTAATGGAAAATAACATTCAACCGATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'47-55,'47-53,48-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTACGCTACGCAGACTCT
R:
GCCACATCACTAAGAATCTGTCTGT
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]