RnoEX0057430 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82236656-82238850:+
Coord C1 exon
chr8:82236656-82236810
Coord A exon
chr8:82237823-82237912
Coord C2 exon
chr8:82238700-82238850
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTTCTCTTGTCTAAGGAA
3' ss Score
6.81
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ACCTGAAGCCCCGAGGCGTGGTGGTGAACATGATCCCTGGGCTGCCAGCTCACATCCTGTTCATGTGTGTGCGGTATGCAGACTCCCTGAACGATGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
Seq A exon
GAACACTTTGAAGATTTGGAGATGCTGTCCTTCTGGCTTTCCAACACTTGTCATTTTCTCAACTGCCTGAAGCAGTACAGTGGAGAAGAG
Seq C2 exon
GAATTCATGAAGTGTAACAGCCCACAGCAGAATAAGAACTGCTTGAACAATTTTGATCTTACAGAATACAGACAGATTCTGAGTGATGTGGCTATACGAATTTACCATCAGTTCATCCTCGTGATGGAAAACAATCTCCAGCCGATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'50-53,'50-52,51-53
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTGGTGAACATGATCCC
R:
CTGCTGTGGGCTGTTACACTT
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]