DreEX6100894 @ danRer10
Exon Skipping
Gene
ENSDARG00000074622 | myo5ab
Description
myosin VAb [Source:ZFIN;Acc:ZDB-GENE-050411-72]
Coordinates
chr25:7441648-7443775:-
Coord C1 exon
chr25:7443621-7443775
Coord A exon
chr25:7443348-7443434
Coord C2 exon
chr25:7441648-7441798
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCGTCTGTCTGTGTTTGCAGAAA
3' ss Score
10.56
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACCTCAAACCTCGAGGTGTAGCTGTGAATCTGGTGCCAGGTCTGCCTGCTTATATTCTCTTCATGTGTTTGCGACATGCCGACTACGCCAACGATGACCTGCGGGTGTCCACCCTCCTCAACACCTCCATCAACAGCATCAAGAACACACTGAAG
Seq A exon
AAACGTGGAGATTTTGAGAGCATTTCATTCTGGCTGGCGAACACCTGTCGCTTCCTGCATTGCCTGAAGCAGTACAGTGGAGAAGAG
Seq C2 exon
GGATATTCAAAGCACAACACCCCTCGGCAAAATGAACACTGCCTGACAAACTTTGACCTGTCTGAGTACCGGCAGGTTTTGAGTGATCTGGCCATTCAGATCTACCAGCAGCTCATCCGCGTCATAGAAAACATCTTACAACCTATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074622-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATCTGGTGCCAGGTCTG
R:
CAGGCAGTGTTCATTTTGCCG
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]