BtaEX6053635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58141106-58146102:+
Coord C1 exon
chr10:58141106-58141260
Coord A exon
chr10:58144291-58144380
Coord C2 exon
chr10:58145952-58146102
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGGCTTATTCTCTCTTTTAGAAA
3' ss Score
8.46
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACTGAAGCCACGTGGTGTAGCAGTCAATTTGATTCCAGGGTTACCAGCGTATATCCTGTTTATGTGTGTTCGACACGCTGACTACCTGAATGATGATCAGAAAGTAAGGTCGTTGCTAACATCAACAATTAATAGCATCAAAAAAGTATTAAAG
Seq A exon
AAAAGAGGTGATGATTTTGAAACCGTCTCCTTTTGGCTTTCTAACACATGCCGATTTTTGCACTGTTTAAAGCAGTACAGTGGAGAAGAG
Seq C2 exon
GGCTTTATGAAACACAACACCTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACTTGGCTGAGTACCGGCAGGTGCTCAGTGACTTGGCAATTCAGATCTACCAGCAGCTCGTGAGGGTGTTAGAGAACATCCTTCAGCCAATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGACACGCTGACTACCTG
R:
ATTGCCAAGTCACTGAGCACC
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]