DreEX6066365 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39054100-39055659:+
Coord C1 exon
chr18:39054100-39054254
Coord A exon
chr18:39054397-39054486
Coord C2 exon
chr18:39055509-39055659
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCCATAACTCCACAGAAA
3' ss Score
8.91
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGCTGAAGCCTCGTGGTGTTGCAGTGAATCTGATACCAGGTCTGCCCGCATACATCCTCTTCATGTGTCTGCGCCATGCTGACTACATCAACGATGACCAGAAAGTGCGATCTCTACTCACCTCCGTCATCAACAGCATCAAGAAGATCCTCAAG
Seq A exon
AAACGAGGTGATGACTTTGAGACTGTTTCCTTCTGGTTGGCCAACACATGTCGTTTTCTGCACTGCCTGAAACAGTACAGTGGTGATGAG
Seq C2 exon
CAATTCATGAAGCATAATAGCCCAAAGCAGAACGAACACTGTCTCTCTAACTTTGACCTGGCAGAGTACCGGCAGGTTCTGAGCGATCTGGCCATTCAGATCTACCAGCAGCTCATCAAGTGTATGGAAAACATCCTGCAGCCCATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'47-44,'47-43,48-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF058146=DUF843=PU(83.3=86.5)
A:
PF058146=DUF843=PD(13.0=23.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCATGTGTCTGCGCCAT
R:
CTCAGAACCTGCCGGTACTCT
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]