RnoEX6036538 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82142133-82149227:+
Coord C1 exon
chr8:82142133-82142287
Coord A exon
chr8:82147439-82147528
Coord C2 exon
chr8:82149077-82149227
Length
90 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTTTTCTCTTTCAGAAA
3' ss Score
12.03
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACTAAAGCCACGTGGTGTGGCTGTCAATCTGATTCCAGGGTTACCGGCATATATCTTGTTTATGTGTGTGCGACATGCCGACTACCTGAACGATGATCAGAAAGTAAGATCATTGCTGACATCAACAATTAACAGCATCAAAAAAGTCCTGAAG
Seq A exon
AAAAGAGGTGACGATTTTGAAACTGTCTCCTTCTGGCTCTCTAACACATGTCGATTTTTGCACTGTTTGAAGCAATATAGTGGAGAAGAG
Seq C2 exon
GGCTTCATGAAACACAACACGTCTCGCCAGAATGAACACTGCCTCACCAATTTTGACCTTGCTGAGTATCGGCAAGTACTGAGTGACTTGGCCATTCAGATCTATCAGCAGCTTGTGAGGGTGTTAGAGAACATTCTTCAGCCAATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'51-56,'51-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGGCTGTCAATCTGA
R:
GTTCATTCTGGCGAGACGTGT
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]