HsaEX6074850 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52321359-52328006:-
Coord C1 exon
chr15:52327852-52328006
Coord A exon
chr15:52323355-52323369
Coord C2 exon
chr15:52321359-52321509
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTTGCACTGCTTGAAACAGTAC
3' ss Score
4.08
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACTGAAGCCACGTGGTGTAGCAGTCAATTTGATTCCAGGATTACCGGCATATATCCTGTTCATGTGTGTTCGACATGCTGACTACCTGAATGATGATCAGAAAGTAAGGTCGTTGCTAACATCAACAATTAACAGCATCAAAAAAGTATTGAAG
Seq A exon
TACAGTGGAGAAGAG
Seq C2 exon
GGCTTTATGAAGCACAACACATCTCGCCAGAATGAACACTGCCTCACCAATTTTGACCTGGCTGAGTATCGGCAGGTGCTGAGTGACTTGGCCATTCAGATCTACCAGCAGCTCGTGCGGGTGTTAGAGAACATCCTTCAGCCAATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'88-99,'88-98,89-99
Average complexity
S*
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCGACATGCTGACTACC
R:
GGCGAGATGTGTTGTGCTTCA
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains