GgaEX1038135 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8324796-8326681:+
Coord C1 exon
chr10:8324796-8324950
Coord A exon
chr10:8325741-8325830
Coord C2 exon
chr10:8326531-8326681
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTTTATTTGTGCCTTCAGAAA
3' ss Score
9.48
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGCTGAAACCACGCGGGGTAGCAGTCAACCTGATTCCAGGACTACCAGCATATATTTTGTTCATGTGTGTACGCCACGCAGATTACCTTAACGATGACCAGAAAGTGCGTTCATTGTTGACCTCCACTATCAATGGCATCAAAAAAGTGCTGAAG
Seq A exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
Seq C2 exon
GGGTTTATGAAGCATAATACACCTCGTCAGAATGAGCACTGCCTCACTAATTTTGACTTAGCTGAATACAGACAAGTCCTGAGTGACTTGGCTATTCAGATCTACCAGCAACTGGTCCGCGTGTTGGAGAACATTCTGCAACCCATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'65-68,'65-66,66-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCACGCAGATTACCTT
R:
GCCAAGTCACTCAGGACTTGT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]