GgaEX1038135 @ galGal3
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10074258-10076143:+
Coord C1 exon
chr10:10074258-10074412
Coord A exon
chr10:10075203-10075292
Coord C2 exon
chr10:10075993-10076143
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTTTATTTGTGCCTTCAGAAA
3' ss Score
9.48
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGCTGAAACCACGCGGGGTAGCAGTCAACCTGATTCCAGGACTACCAGCATATATTTTGTTCATGTGTGTACGCCACGCAGATTACCTTAACGATGACCAGAAAGTGCGTTCATTGTTGACCTCCACTATCAATGGCATCAAAAAAGTGCTGAAG
Seq A exon
AAAAGAGGTGATGACTTCGAAACGGTGTCTTTCTGGCTGTCCAACACCTGCCGGTTTTTGCACTGTTTGAAGCAGTACAGCGGAGAAGAG
Seq C2 exon
GGGTTTATGAAGCATAATACACCTCGTCAGAATGAGCACTGCCTCACTAATTTTGACTTAGCTGAATACAGACAAGTCCTGAGTGACTTGGCTATTCAGATCTACCAGCAACTGGTCCGCGTGTTGGAGAACATTCTGCAACCCATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624-'47-54,'47-53,48-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCCACGCAGATTACCTT
R:
GCCAAGTCACTCAGGACTTGT
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]