RnoEX0057413 @ rn6
Exon Skipping
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70711696-70716252:+
Coord C1 exon
chr18:70711696-70711847
Coord A exon
chr18:70713706-70713792
Coord C2 exon
chr18:70716102-70716252
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTTTCACAGAAGCAC
3' ss Score
0.71
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACCTGAAGCCCCAGATGCTGTCGGGCACCGTGCCCTGTCTGCCTGCATACATACTCTACATGTGCATCAGGCACGCGGACTACACCAACGATGACCTCAAGGTGCACTCGTTGCTGAGCTCCACCATCAATGGCATTAAGAAAGTCCTCAAG
Seq A exon
CACAATGAGGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCGCCTCCTTCACTGTTTGAAGCAGTACAGTGGGGATGAG
Seq C2 exon
GGTTTCATGACACAGAACACGGCGAAGCAGAATGAGCACTGTCTCAAGAACTTTGACCTCACTGAATACCGTCAGGTGCTAAGTGACCTTTCCATTCAGATCTATCAGCAACTCATTAAAATTGCTGAGGGCCTGCTACAGCCTATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-'65-51,'65-50,66-51
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGAGCTCCACCATCAA
R:
GTAGCAGGCCCTCAGCAATTT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]