BtaEX6092675 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr24:49969285-49972530:-
Coord C1 exon
chr24:49972379-49972530
Coord A exon
chr24:49971592-49971681
Coord C2 exon
chr24:49969285-49969435
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACATCTTCTTCTTTTCACAGAAG
3' ss Score
9.34
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGTTGAAACCGCAGGTGCTGGCGGGCGCGGTGCCCTGCCTCCCAGCCTACATCCTCTACATGTGCCTCCGGCACGCGGACTACGTGAACGACGACCTCAAGGTGCACTCCCTGCTGACCTCCACCATCAACGGCATCAAGAAGGTCCTCAAG
Seq A exon
AAGCACAATGAGGACTTTGAGATGACGTCGTTCTGGTTGTCCAACACCTGCCGCCTCCTGCACTGCTTGAAGCAGTACAGCGGGGACGAG
Seq C2 exon
GGCTTCATGACTCAGAACACTGCAAAGCAGAATGAGCACTGTCTTAAGAACTTTGACCTCACTGAATACCGCCAGGTGCTGAGCGATCTTTCCATTCAGATCTACCAGCAGCTCATTAAAATCGCCGAGGGCCTCTTGCAGCCTATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455-'43-57,'43-54,44-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTACATGTGCCTCCGG
R:
TGGCGGTATTCAGTGAGGTCA
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]