MmuEX6002378 @ mm10
Exon Skipping
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74740474-74744771:+
Coord C1 exon
chr18:74740474-74740625
Coord A exon
chr18:74742126-74742215
Coord C2 exon
chr18:74744621-74744771
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTTTCTTTTCACAGAAG
3' ss Score
10.16
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACCTGAAGCCTCAGATGCTGTCGGGCACCGTGCCCTGTCTGCCTGCATACATACTCTATATGTGCATCAGGCACGCGGATTACACCAACGATGACCTCAAGGTGCACTCGTTGCTGAGCTCCACCATCAACGGCATTAAGAAAGTCCTCAAG
Seq A exon
AAGCACAATGATGACTTTGAGATGACGTCATTCTGGCTATCCAACACCTGCCGCTTCCTTCACTGTCTGAAGCAATACAGTGGTGATGAG
Seq C2 exon
GGTTTCATGACACAGAACACTGCGAAGCAGAATGAGCACTGTCTCAAGAACTTTGACCTCACTGAATACCGCCAGGTGCTAAGCGACCTTTCCATTCAGATCTATCAGCAGCTCATTAAAATCGCCGAGGGCTTGCTGCAGCCTATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885-'84-66,'84-64,85-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGATTACACCAACGATGA
R:
GAAAGGTCGCTTAGCACCTGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types