DreEX6084468 @ danRer10
Exon Skipping
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22417934-22421297:-
Coord C1 exon
chr21:22421146-22421297
Coord A exon
chr21:22418985-22419074
Coord C2 exon
chr21:22417934-22418084
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTTTGACTGTCTAGAAA
3' ss Score
7.07
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACATGAAGCCCAACGCTGTGTCCGCCACTGTCCCCTGCCTCCCCGCATACATCCTCTTCATGTGCATCCGTCACGCCGACTACATCAATGATGACCAGAAAGTTCATTCACTACTGACCGCTACCATCAACGCCATCAAAAAAGTGCTGAAG
Seq A exon
AAAAACAACGATGACTTTGAGATGACCTCCTTTTGGCTGGCAAATGCAAGTCGACTTTTACACTGTCTGAAGCAGTACAGCGGCGATGAG
Seq C2 exon
GCGTTCATGACCCAGAACTCTGCCAAGCAGAACGAGCACTGCCTGAAGAACTTTGACCTGGCGGAGTACCGACAGGTTCTGAGTGACCTCTCCATCCAAATCTATCAGCAGCTTGTGAAAGTTGCCGAGGCCAACATGCAGCCCATGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-'42-39,'42-38,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058146=DUF843=FE(69.4=100)
A:
PF058146=DUF843=PD(8.3=20.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGCATACATCCTCTTCA
R:
CCGCCAGGTCAAAGTTCTTCA
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]