HsaEX6074850 @ hg19
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52613556-52620203:-
Coord C1 exon
chr15:52620049-52620203
Coord A exon
chr15:52615552-52615641
Coord C2 exon
chr15:52613556-52613706
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGACTTATTCTCTCTTTCAGAAA
3' ss Score
9.59
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACTGAAGCCACGTGGTGTAGCAGTCAATTTGATTCCAGGATTACCGGCATATATCCTGTTCATGTGTGTTCGACATGCTGACTACCTGAATGATGATCAGAAAGTAAGGTCGTTGCTAACATCAACAATTAACAGCATCAAAAAAGTATTGAAG
Seq A exon
AAAAGAGGTGATGATTTTGAAACCGTCTCCTTCTGGCTCTCTAACACATGCCGATTTTTGCACTGCTTGAAACAGTACAGTGGAGAAGAG
Seq C2 exon
GGCTTTATGAAGCACAACACATCTCGCCAGAATGAACACTGCCTCACCAATTTTGACCTGGCTGAGTATCGGCAGGTGCTGAGTGACTTGGCCATTCAGATCTACCAGCAGCTCGTGCGGGTGTTAGAGAACATCCTTCAGCCAATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGGTGTAGCAGTCAAT
R:
GGCGAGATGTGTTGTGCTTCA
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)