MmuEX1017998 @ mm10
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75203708-75211168:+
Coord C1 exon
chr9:75203708-75203862
Coord A exon
chr9:75209214-75209303
Coord C2 exon
chr9:75211018-75211168
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGATTTCTTTTCTCTTTCAGAAA
3' ss Score
10.12
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACTAAAGCCACGTGGTGTGGCTGTCAATCTGATTCCAGGGTTACCAGCATATATCTTGTTTATGTGTGTACGACATGCTGACTATCTGAACGATGATCAGAAAGTAAGATCATTGCTGACATCAACAATTAACAGCATCAAAAAAGTCTTGAAG
Seq A exon
AAAAGAGGTGACGATTTTGAAACTGTCTCCTTCTGGCTCTCTAACACATGTCGATTTTTGCACTGTTTGAAGCAATATAGTGGAGAGGAG
Seq C2 exon
GGCTTTATGAAGCACAACACGTCTCGCCAGAATGAGCACTGCCTCACCAATTTTGACCTTGCTGAATATCGGCAAGTACTGAGTGACTTGGCCATTCAGATCTATCAGCAGCTTGTGAGGGTGTTAGAGAACATTCTTCAGCCAATGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'67-68,'67-64,68-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGGCTGTCAATCTGA
R:
TCATTCTGGCGAGACGTGTTG
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types