MmuEX0030547 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75141733-75145493:+
Coord C1 exon
chr9:75141733-75141887
Coord A exon
chr9:75142969-75143058
Coord C2 exon
chr9:75145211-75145493
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTCTCTTGTCTAAGGAA
3' ss Score
6.57
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACCTGAAGCCCCGAGGTGTGGTGGTGAACATGATCCCAGGGCTGCCAGCTCACATCCTGTTCATGTGCGTGCGATACGCGGACTCCCTAAACGACGCCAACATGCTCAAATCCCTCATGAACAGTGCTATTAACGGCATCAAGCATGTGGTTAAG
Seq A exon
GAACATTTTGAAGATTTGGAGATGCTGTCCTTCTGGCTTTCCAACACTTGCCATTTTCTTAACTGCCTGAAGCAGTACAGCGGAGAAGAG
Seq C2 exon
TGCCAGGCATGCTGGAGTATGAGAGCCTGCAGGGCATTTCCGGCCTGAAGCCCACTGGTTTCCGGAAGCGCTCATCCAGCATCGACGACACAGATGCCTACACCATGACGTCCATCCTGCAGCAGCTGAGCTACTTCTACAGCACCATGTGTCAGAACGGCCTGGACCCCGAGATTGTGAGGCAGGCGGTCAAGCAGTTGTTCTACCTGGTCGGGGCGGTGACCCTCAACAGCCTCCTCCTGCGCAAGGACATGTGCTCCTGCAGGAAAGGCATGCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_MULTIEX2-22/27=21-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0184314=DIL=PU(31.1=34.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTAAACGACGCCAACATG
R:
GTGTAGGCATCTGTGTCGTCG
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: