GgaEX0026801 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:10111687-10115648:+
Coord C1 exon
chr10:10111687-10111841
Coord A exon
chr10:10112625-10112714
Coord C2 exon
chr10:10115498-10115648
Length
90 bp
Sequences
Splice sites
3' ss Seq
GATTGCTTTATCATTTTCAGGAA
3' ss Score
9.52
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATTTAAAGCCACGTGGAGTTGTAGTCAATATGATACCCGGCCTTCCAGCTCACATCCTATTCATGTGTGTGAGGTATGCAGATTATCTGAACGATGCTGACATGCTGAAATCTTTCATAAATGTAACCATTGATGGTATCAAACAAGTTGTTAAG
Seq A exon
GAAAACTCAGAAGATTTTGAGATGTTGTCTTTTTGGCTTTCCAATACATACTATTTCCTTAACTGTTTGAAGCAGTACAGTGGGGAAGAG
Seq C2 exon
GAATTTATGAAGTACAACACCCCTCATCAGAATAAGAACTGCTTGAAGCATTTTGATCTCTCGGAGTACAGACAGGTTCTCAGTGATTTGGCCATTCGGATCTATCACCAGTTCATTCTTGTAATGGAGAACAACATTCAGCACATGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023524-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGATGCTGACATGCTGA
R:
TCCGAATGGCCAAATCACTGA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]