BtaEX6053914 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62073487-62076487:+
Coord C1 exon
chr10:62073487-62073651
Coord A exon
chr10:62076198-62076266
Coord C2 exon
chr10:62076362-62076487
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTGCTTCCGTAGCTG
3' ss Score
8.95
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATACCCGCTCTGGAAACTGCTATTTGGATATCCGTCCTCGGGGAGACAATGGAGATACAGCCTGCAGCAATGAAATTGGGGTTGGAGTGTCCAAGGCTTCCTGCTGCTGCTCTCTGGGTAAAGCCTGGGGCACTCCTTGTGAGCTGTGCCCGCCTGTGAACACAT
Seq A exon
CTGAGTACAAAATTCTTTGTCCTGGAGGAGAAGGTTTTCGACCCAACCCTATCACCGTTATATTGGAAG
Seq C2 exon
ATATTGATGAGTGCCAGGAGCTTCCAGGGTTGTGCCAAGGCGGGAAATGTATCAATACCTTCGGCAGCTTCCAGTGCCGCTGTCCAACGGGCTACTACCTGAATGAAGATACCCGAGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'41-49,'41-48,42-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGGGAGACAATGGAGAT
R:
GATACATTTCCCGCCTTGGCA
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]