RnoEX6018877 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117612941-117615271:-
Coord C1 exon
chr3:117615107-117615271
Coord A exon
chr3:117613160-117613228
Coord C2 exon
chr3:117612941-117613066
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGGAACTTTTGTTTCAATAGCCG
3' ss Score
5.96
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATACTCGCTCTGGAAACTGCTATCTGGATATCCGGCCCCGGGGAGACAATGGGGATACGGCCTGCAGCAATGAAATTGGAGTTGGTGTTTCTAAGGCTTCCTGCTGTTGCTCTCTGGGTAAAGCTTGGGGAACCCCATGTGAGCTGTGTCCTCCTGTGAACACAT
Seq A exon
CCGAGTATAAAATTCTCTGCCCCGGAGGAGAAGGTTTTCGTCCAAATCCCATCACCGTTATATTGGAAG
Seq C2 exon
ACATCGATGAGTGCCAGGAGCTCCCAGGGCTGTGCCAAGGGGGGAAGTGCATCAACACCTTTGGCAGCTTCCAGTGTCGCTGTCCAACGGGTTACTACCTGAATGAAGACACACGGGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGCAGCAATGAAATTGG
R:
TGCCAAAGGTGTTGATGCACT
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]