MmuEX6104619 @ mm9
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125169541-125171755:-
Coord C1 exon
chr2:125171591-125171755
Coord A exon
chr2:125169761-125169829
Coord C2 exon
chr2:125169541-125169666
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGAACTTCTTGTTTCAATAGCTG
3' ss Score
5.17
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATACTCGCTCTGGAAACTGCTATCTGGATATCCGACCCCGGGGAGACAATGGAGATACAGCCTGCAGCAATGAAATTGGAGTTGGTGTCTCTAAGGCTTCCTGCTGTTGTTCACTGGGTAAAGCTTGGGGAACCCCATGTGAGCTGTGTCCTTCTGTGAACACAT
Seq A exon
CTGAGTATAAAATTCTTTGCCCTGGAGGAGAAGGTTTTCGTCCAAATCCCATCACCGTTATATTGGAAG
Seq C2 exon
ACATCGATGAGTGCCAGGAGCTTCCAGGGCTGTGCCAAGGGGGGAAGTGCATCAATACCTTTGGCAGCTTCCAGTGTCGCTGTCCAACTGGTTACTACCTGAATGAAGACACTCGAGTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTCCTGCTGTTGTTCAC
R:
GTAACCAGTTGGACAGCGACA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: