GgaEX1024556 @ galGal4
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9694248-9704919:-
Coord C1 exon
chr10:9704755-9704919
Coord A exon
chr10:9704286-9704354
Coord C2 exon
chr10:9694248-9694373
Length
69 bp
Sequences
Splice sites
3' ss Seq
TAACTCTATTTTGTTTTCAGCGG
3' ss Score
8.16
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
ATACACGATCTGGCAACTGTTACCTGGACATTAAAACTCGGGGAGATAATGGTGGCACCTTTTGCAGCAATGAGATTGGAGTGGGTGTCTCTAAGGCTTCCTGTTGCTGCTCCCTGGGCAGAGCTTGGGGAGTTCCCTGTGAACAGTGCCCATCTGTGAACACAA
Seq A exon
CGGAGTATAAGATTCTTTGCCCTGGAGGAGAAGGATTCCGACCAAACCCTATTACAGTTATATTGGAGG
Seq C2 exon
ATCGGAATGAATGTCAAGAAATTCCCAATATCTGCAGCCATGGGCAGTGTATTGACACTGTCGGAAGTTTTTACTGTATTTGTCACAATGGATTCAAGACCAACGATGACAGAACAATGTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960_MULTIEX1-31/41=30-38
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=PD(22.2=51.2),PF062476=Plasmod_Pvs28=FE(38.9=100),PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGATAATGGTGGCACCT
R:
CCCATGGCTGCAGATATTGGG
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]