GgaEX1024556 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11710490-11711363:-
Coord C1 exon
chr10:11711199-11711363
Coord A exon
chr10:11710730-11710798
Coord C2 exon
chr10:11710490-11710615
Length
69 bp
Sequences
Splice sites
3' ss Seq
TAACTCTATTTTGTTTTCAGCGG
3' ss Score
8.16
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
ATACACGATCTGGCAACTGTTACCTGGACATTAAAACTCGGGGAGATAATGGTGGCACCTTTTGCAGCAATGAGATTGGAGTGGGTGTCTCTAAGGCTTCCTGTTGCTGCTCCCTGGGCAGAGCTTGGGGAGTTCCCTGTGAACAGTGCCCATCTGTGAACACAA
Seq A exon
CGGAGTATAAGATTCTTTGCCCTGGAGGAGAAGGATTCCGACCAAACCCTATTACAGTTATATTGGAGG
Seq C2 exon
ATATTGATGAATGTCAAGAATTGCCTGGGCTCTGCCAAGGAGGAAAATGTATTAATACATTTGGTAGCTTCCAGTGTCAATGTCCATCAGGTTACTATTTGAATGAGGAGACTCGAGTATGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'39-45,'39-44,40-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(12.5=10.7),PF0068312=TB=PU(85.7=64.3)
A:
PF0068312=TB=PD(11.9=20.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(48.6=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGGGTGTCTCTAAGGCT
R:
TGGACATTGACACTGGAAGCT
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]