Special

BtaEX6053924 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62052152-62054958:+
Coord C1 exon
chr10:62052152-62052277
Coord A exon
chr10:62052380-62052505
Coord C2 exon
chr10:62054836-62054958
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTATTTTTAAACAGACA
3' ss Score
9.22
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATCGATGAGTGTCAGAGAGATCCGCTGTTGTGCCGAGGAGGCGTGTGCCTGAACACTGAGGGAAGTTACCGCTGTGAATGTCCCCCTGGCCATCAGCTGGCCCCCAACATCTCGGCGTGTATAG
Seq A exon
ACATCAACGAGTGTGAACTAAGTGCACACCTCTGCCCCCATGGCCGCTGCGTGAACCTCATAGGAAAGTACCAGTGTGCCTGCAACCCTGGCTACCACTCTACCCCTGACAGGCTGTTTTGTGTTG
Seq C2 exon
ACATTGATGAATGCAGCATAATGAACGGTGGCTGTGAGACCTTCTGCACAAACTCTGAAGGTAGCTACGAATGTAGCTGTCAGCCAGGATTTGCACTGATGCCTGACCAGAGGTCCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'31-36,'31-35,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTCAGAGAGATCCGCT
R:
CTGTGCAGGACCTCTGGT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]