RnoEX0035139 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117631057-117632616:-
Coord C1 exon
chr3:117632491-117632616
Coord A exon
chr3:117632279-117632404
Coord C2 exon
chr3:117631057-117631179
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGCTTCTAAATAGACA
3' ss Score
8.19
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ATATTGATGAATGCCAGAGAGATCCTCTCCTCTGTCGAGGAGGCATCTGCCACAACACAGAGGGAAGTTATCGCTGTGAATGTCCTTCTGGCCACCAACTGTCTCCCAACATCTCTGCGTGCATTG
Seq A exon
ACATCAACGAGTGTGAACTGAGTGCCAACCTCTGTCCCAGCGGGCGTTGTGTGAACCTCATTGGGAAGTACCAGTGTGCCTGCAACCCGGGCTATCACCCCACTCACGATAGGCTTTTCTGTGTCG
Seq C2 exon
ACATTGATGAGTGCAGCATAATGAATGGTGGTTGTGAGACCTTCTGCACAAACTCTGACGGGAGCTATGAATGTAGCTGTCAGCCAGGCTTCGCGCTGATGCCAGACCAGCGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'34-33,'34-32,35-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAATGCCAGAGAGATCCT
R:
GTGCACGATCGCTGGTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]