Special

MmuEX6104610 @ mm10

Exon Skipping

Gene
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125361184-125362800:-
Coord C1 exon
chr2:125362675-125362800
Coord A exon
chr2:125362462-125362587
Coord C2 exon
chr2:125361184-125361306
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGTCTCTAAACAGACA
3' ss Score
10.8
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAGAGAGATCCTCTCCTGTGTCGAGGAGGCATTTGCCACAACACAGAGGGAAGCTATCGCTGCGAATGTCCTCCTGGTCACCAATTGTCCCCAAACATCTCTGCATGCATTG
Seq A exon
ACATCAACGAGTGTGAGCTGAGTGCGAATCTCTGTCCCCATGGGCGTTGTGTGAACCTCATAGGGAAGTACCAGTGTGCCTGCAACCCTGGCTACCACCCCACTCATGACAGGCTCTTCTGTGTCG
Seq C2 exon
ATATTGATGAATGCAGCATAATGAACGGTGGTTGTGAGACCTTCTGCACAAACTCTGACGGGAGCTATGAATGTAGCTGTCAGCCAGGCTTCGCGCTAATGCCAGACCAGCGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'38-35,'38-34,39-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAATGTCAGAGAGATCCTC
R:
GTGCACGATCGCTGGTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types