GgaEX1024545 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11732226-11733539:-
Coord C1 exon
chr10:11733414-11733539
Coord A exon
chr10:11733151-11733276
Coord C2 exon
chr10:11732226-11732348
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTTCTTTTGCAACAGACA
3' ss Score
8.41
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ACATTGATGAGTGTCAGCGCAATCCCCTTCTCTGCCGAGGTGGCACCTGCATCAACACAGAGGGAAGTTTTCGGTGTGATTGTCCTCCAGGCCACCACATTTCACCAAATATTTCTGCGTGTATAG
Seq A exon
ACATTAATGAATGTGACCTAAGCACCAACCTGTGTCGAAACGGACATTGTGTCAACCTGATTGGGAAGTACCAATGTGCTTGCAACCCTGGTTATCAGTCCACAGCTGACAAGTTACACTGCATTG
Seq C2 exon
ATATTGATGAATGCAGCATAATGAATGGTGGCTGTGAGAACTTCTGTACAAACTCAGAGGGCAGCTATGAATGTAGCTGTAAACAAGGATTTGCACTCATGCCAGACCACAGGACATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGTCAGCGCAATCC
R:
CTGTGCATGTCCTGTGGTCTG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]