MmuEX6104610 @ mm9
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125186920-125188536:-
Coord C1 exon
chr2:125188411-125188536
Coord A exon
chr2:125188198-125188323
Coord C2 exon
chr2:125186920-125187042
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGTCTCTAAACAGACA
3' ss Score
10.8
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATATTGATGAATGTCAGAGAGATCCTCTCCTGTGTCGAGGAGGCATTTGCCACAACACAGAGGGAAGCTATCGCTGCGAATGTCCTCCTGGTCACCAATTGTCCCCAAACATCTCTGCATGCATTG
Seq A exon
ACATCAACGAGTGTGAGCTGAGTGCGAATCTCTGTCCCCATGGGCGTTGTGTGAACCTCATAGGGAAGTACCAGTGTGCCTGCAACCCTGGCTACCACCCCACTCATGACAGGCTCTTCTGTGTCG
Seq C2 exon
ATATTGATGAATGCAGCATAATGAACGGTGGTTGTGAGACCTTCTGCACAAACTCTGACGGGAGCTATGAATGTAGCTGTCAGCCAGGCTTCGCGCTAATGCCAGACCAGCGATCGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAATGTCAGAGAGATCCTC
R:
GTGCACGATCGCTGGTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: