BtaEX6054415 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75536618-75573540:-
Coord C1 exon
chr10:75573425-75573540
Coord A exon
chr10:75561040-75561432
Coord C2 exon
chr10:75536618-75537044
Length
393 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTTGTCTCTTTTAGGTT
3' ss Score
12.23
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGGACAAAATTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTGCAACAGCTCACGCCAATGAATAAAACAGAGGTGGTCCACAAACATTCAAGACTAGCTGAA
Seq A exon
GTTCTTCAGCTGGGATCAGATATCCTTCCTCAGTATAAGCAAGAAGCGCCAAAGACGCCACCACACATTATTTTACACTATTGTGCTTTTAAAACAACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATTATGGTTCCTTACAACGTCTCCTTCAAAACGAAGCAGAACAACATAGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTTATTTTTCTGGTTGACATTGTTTTAAATTTTCACACAACCTTTGTGGGACCTGGTGGAGAGGTTATTTCTGACCCCAAGTTGATAAGGATGAACTATCTGAAAACTTGGTTTGTGATCGATCTGTTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
Seq C2 exon
GGAATCAGCAGTCTCTTCAGTTCTTTAAAAGTGGTGCGTCTCTTGAGACTGGGCCGTGTTGCCAGGAAATTGGACCATTACCTGGAGTATGGAGCAGCTGTCCTTGTGCTCCTGGTTTGTGTGTTTGGACTAGTTGCTCACTGGCTGGCCTGCATATGGTACAGCATTGGGGACTACGAGGTCATCGATGAAGTCACGAACACCATCCAAATAGACAGTTGGCTCTACCAGCTGGCCTTGAGCATTGGGACTCCGTATCGATACAATACCAGTGCAGGGATATGGGAAGGAGGACCCAGCAAGGATTCCCTGTATGTGTCCTCTCTCTACTTTACCATGACAAGCCTTACAACCATAGGATTTGGAAACATAGCTCCTACCACAGACGTGGAGAAGATGTTTTCAGTGGCCATGATGATGGTTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
C2:
PF0052026=Ion_trans=FE(64.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCTTTGACAAATAGCCGA
R:
TCGATACGGAGTCCCAATGCT
Band lengths:
351-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]