DreEX6044470 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20200701-20216841:-
Coord C1 exon
chr20:20216726-20216841
Coord A exon
chr20:20211933-20212325
Coord C2 exon
chr20:20200701-20200793
Length
393 bp
Sequences
Splice sites
3' ss Seq
TTCTTTACTCTGTTTTCAAGGCT
3' ss Score
7.07
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GATGGACCAAGTTTGCCAGGCTGACCAGGGCATTAACCAACAGCCGAGGTACGGTTCAGCAGCTCACCCCCATGAACAAGACTGAAGTCAGTCACAAGCATTCACGACTGGCAGAG
Seq A exon
GCTCTTCAACTGGGCTCCGACATTCTCCCTCAATATAAGCAAGAGGCTCCTAAAACTCCACCTCATATTATATTGCACTACTGCACCTTTAAGACCACTTGGGACTGGGTTATTCTCATCCTCACCTTCTACACAGCCATCATGGTGCCCTACAATGTGTCTTTTAAGACCAAGCAGAACAACCTGGTGTGGTTGGTACTGGACAGCGTGGTGGATGTCATCTTCCTAGTGGATATTGTGTTGAACTTTCATACAACTTTTGTGGGACCTGGAGGAGAGGTCATATCTGACCCAAAGCTTATACGCATGAACTACTTGAAGACCTGGTTTGTCATAGACCTGCTGTCCTGTCTACCCTATGACATCATCAATGCCTTTGAAAACGTGGATGAG
Seq C2 exon
GACACCTTTGTAGACTCCTCTGCTGTGGGTCACTTGCCATCTGCAGGCCATTCTCCACGAAACGCCACACGTGCGGAGGATTCAGTGCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'4-7,'4-4,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(25.9=49.6)
C2:
PF0052026=Ion_trans=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACCAAGTTTGCCAGGC
R:
CAGCACTGAATCCTCCGCAC
Band lengths:
206-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]