MmuEX6081555 @ mm9
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:76188392-76221023:-
Coord C1 exon
chr12:76220908-76221023
Coord A exon
chr12:76215178-76215570
Coord C2 exon
chr12:76188392-76188818
Length
393 bp
Sequences
Splice sites
3' ss Seq
ACACTGTTGCTTTCTTTTAGGTG
3' ss Score
12.13
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGGACGAAGTTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAGCATTCAAGACTAGCTGAA
Seq A exon
GTGCTTCAGCTGGGATCAGACATCCTTCCTCAGTACAAACAAGAAGCGCCAAAGACGCCACCACATATCATCTTACACTATTGTGCTTTTAAAACTACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATCATGGTTCCTTACAATGTTTCTTTCAAAACAAAGCAGAACAATATCGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTGATTTTTCTGGTGGACATTGTTTTAAATTTTCACACGACTTTTGTGGGGCCGGGTGGAGAGGTCATTTCTGACCCGAAGCTTATAAGGATGAACTATCTGAAAACTTGGTTTGTGATTGATCTGCTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
Seq C2 exon
GGAATCAGCAGTCTCTTCAGCTCTTTAAAGGTGGTGCGCCTTTTACGCCTGGGCCGTGTTGCTAGGAAACTGGACCATTACCTGGAATATGGAGCAGCGGTCCTTGTGCTCCTGGTATGTGTGTTTGGACTGGTGGCTCACTGGCTGGCTTGCATCTGGTACAGCATTGGAGACTATGAGGTCATTGATGAAGTCACCAACACCATTCAAATAGACAGCTGGCTCTACCAGTTGGCCTTGAGCATTGGGACCCCATATCGCTACAATACGAGTGCAGGGATCTGGGAAGGAGGACCCAGCAAGGACTCCCTGTATGTGTCCTCCCTCTACTTCACCATGACGAGCCTTACAACCATAGGATTTGGAAACATAGCTCCGACCACAGACGTGGAGAAGATGTTCTCAGTGGCCATGATGATGGTCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
C2:
PF0052026=Ion_trans=FE(64.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAAGTGTTTTACAGCAGC
R:
CCCTGCACTCGTATTGTAGCG
Band lengths:
353-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: