DreEX6062711 @ danRer10
Exon Skipping
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37224625-37244273:-
Coord C1 exon
chr13:37244155-37244273
Coord A exon
chr13:37239387-37239779
Coord C2 exon
chr13:37224625-37225054
Length
393 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTTGTCTTTCTCAGGTT
3' ss Score
11.74
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTGGACCAAGTTTGCACGTTTGACTCGAGCGTTGACCAACAGCAAAAGCACCATTCAGCAGATCACGCCTGTCAGCAGAACCGACGTCACGTCACACAAACCCTCCAGACTTGCAGAG
Seq A exon
GTTCTTCAGCTGGGCTCTGATATCCTTCCGCAGTACAAGCAGGAAGCCCCCAAAACCCCGCCTCACATCATCTTACACTACTGTACCTTTAAGACCACCTGGGACTGGGTCATCCTCATTCTTACCTTCTACACTGCCATCATGGTTCCTTACAATGTCTCCTTCAAGACCAAACAGAATAACGTCACGTGGCTGGTTCTGGACAGCGTTGTGGATGTCATCTTCCTCGTAGACATCGTGCTTAACTTCCACACCACGTTTGTCGGGCCTGGAGGAGAGGTGATCTCAGACCCCAACCTGATCAGGATGAATTACCTCAAGACCTGGTTCGTTATAGACTTGCTGTCCTGTCTGCCCTATGACATCATCAACGCTTTTGAAAACGTGGATGAG
Seq C2 exon
GGCATCAGCAGCTTGTTTAGTTCTCTGAAGGTCGTCCGACTGCTCCGTTTGGGTCGTGTTGCACGTAAACTGGACCACTATCTGGAGTATGGTGCGGCTGTGCTGGTTTTACTGGTCTGTGTATTTGGATTAGTGGCCCACTGGCTGGCCTGCATCTGGTACAGCATTGGAGATTATGAGGTCATTGACGAACAAACCAACACCATCAAGACTGACAGCTGGCTCTTCCAGTTAGCCACCAGCATCGGGTCCCCGTACCGCTACAATGCCAGTGGGACCGGCCAGTGGGAGGGCGGTCCCGGTAAAGACTCTCTATATATAACCTCACTATATTTTACCATGACCAGCCTGACCACCATTGGCTTTGGAAACATCGCGCCAACAACAGATGGAGAGAAGATTTTCTCTGTGGCCATGATGATGGTCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
C2:
PF0052026=Ion_trans=FE(65.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACACAAACCCTCCAGAC
R:
AGAGAGTCTTTACCGGGACCG
Band lengths:
343-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]