RnoEX6029002 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98070540-98102843:-
Coord C1 exon
chr6:98102728-98102843
Coord A exon
chr6:98097887-98098279
Coord C2 exon
chr6:98070540-98070966
Length
393 bp
Sequences
Splice sites
3' ss Seq
ACACCGTTGCTTTCTTTTAGGTT
3' ss Score
11.82
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTGGACGAAATTTGCCCGGTTGACACGGGCTTTGACAAACAGCCGGAGTGTGTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAACATTCAAGACTGGCAGAA
Seq A exon
GTTCTTCAGCTGGGATCAGACATCCTTCCTCAGTACAAACAAGAAGCGCCAAAGACGCCGCCGCACATCATCTTACATTACTGTGCTTTCAAAACTACGTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATCATGGTTCCTTACAACGTTTCCTTCAAAACAAAACAGAACAATATCGCCTGGCTGGTTCTGGACAGCGTGGTGGACGTTATTTTTCTGGTGGACATCGTTTTAAACTTTCACACGACTTTTGTGGGGCCGGGTGGAGAGGTCATTTCTGACCCAAAACTCATACGGATGAACTATCTGAAAACTTGGTTTGTGATTGATCTGCTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
Seq C2 exon
GGAATCAGCAGTCTCTTCAGCTCTTTAAAGGTGGTACGCCTCTTACGCCTGGGCCGTGTTGCTAGGAAACTGGACCATTACCTGGAATATGGAGCAGCGGTCCTTGTGCTCCTGGTATGTGTGTTTGGACTGGTTGCCCACTGGCTGGCCTGCATCTGGTACAGCATTGGAGACTATGAGGTCATTGATGAAGTCACCAACACCATTCAAATAGACAGCTGGCTCTACCAGTTGGCCTTGAGCATTGGGACTCCATATCGCTACAATACCAGTGCAGGGATCTGGGAAGGAGGACCCAGCAAGGACTCCCTGTATGTGTCCTCCCTCTACTTCACCATGACGAGCCTTACAACCATAGGATTTGGAAACATAGCTCCGACCACAGACGTGGAGAAGATGTTCTCAGTGGCCATGATGATGGTCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'1-9,'1-4,6-9=AN
Average complexity
A_C3
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
C2:
PF0052026=Ion_trans=FE(64.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACATGCACACCTGTGGG
R:
CCGCTTCCTTAGATTGCAAGTG
Band lengths:
298-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]