RnoEX6029001 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98097887-98113376:-
Coord C1 exon
chr6:98113248-98113376
Coord A exon
chr6:98102728-98102843
Coord C2 exon
chr6:98097887-98098279
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCATCCTTTAAAGGTT
3' ss Score
10.23
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTACCCCCGTTTGGTTTTACATGCAAATTGCACCAATAAGAAACGAACACGAGAAGGTGGTCTTGTTCCTGTGTACGTTCAAGGATATCACGCTGTTCAAACAGCCCATAGAGGATGACTCAACAAAAG
Seq A exon
GTTGGACGAAATTTGCCCGGTTGACACGGGCTTTGACAAACAGCCGGAGTGTGTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAACATTCAAGACTGGCAGAA
Seq C2 exon
GTTCTTCAGCTGGGATCAGACATCCTTCCTCAGTACAAACAAGAAGCGCCAAAGACGCCGCCGCACATCATCTTACATTACTGTGCTTTCAAAACTACGTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATCATGGTTCCTTACAACGTTTCCTTCAAAACAAAACAGAACAATATCGCCTGGCTGGTTCTGGACAGCGTGGTGGACGTTATTTTTCTGGTGGACATCGTTTTAAACTTTCACACGACTTTTGTGGGGCCGGGTGGAGAGGTCATTTCTGACCCAAAACTCATACGGATGAACTATCTGAAAACTTGGTTTGTGATTGATCTGCTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'1-9,'1-3,5-9=AN
Average complexity
A_C3
Mappability confidence:
92%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGTGCACAACTTCACA
R:
GGTTCCTGGAGAATGAGTTTGCA
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]