GgaEX6039305 @ galGal3
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
NA
Coordinates
chr5:56064777-56083027:+
Coord C1 exon
chr5:56064777-56064905
Coord A exon
chr5:56078451-56078566
Coord C2 exon
chr5:56082635-56083027
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTTCTTCCCTGCAGGTT
3' ss Score
12.09
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAACCCCAGTTTGGTTCTACATGCAAATCGCTCCTATAAGAAATGAGCATGAAAAAGTGGTTTTGTTCCTGTGCACTTTTAAGGATATCACTTTGTTCAAGCAGCCAATAGAAGATGATTCAACAAAAG
Seq A exon
GTTGGACCAAGTTCGCACGGTTGACACGGGCCTTGACGAACAGTCGGAGTGTGCTGCAGCAGCTGACGCCGATGAACAAAGCCGAGGTGGTGCACAAGCATTCCCGCCTGGCTGAA
Seq C2 exon
GTTCTCCAGCTGGGATCTGATATTCTTCCTCAGTACAAGCAAGAAGCTCCAAAGACTCCACCGCACATTATATTACATTATTGTGCTTTTAAGACCACTTGGGACTGGGTCATCCTAATTCTAACCTTCTACACAGCAATTATGGTTCCATATAATGTCTCCTTCAAGACGAAGCAGAACAACATTGCCTGGCTTGTGCTGGACAGTGTCGTGGACGTTATTTTTCTGGTTGACATTGTTTTGAACTTTCATACAACCTTTGTTGGCCCTGGTGGAGAGGTTATATCTGATCCCAAGCTCATAAGGATGAACTACCTGAAGACGTGGTTTGTGATTGATCTTCTGTCCTGTTTACCGTATGACATCATCAATGCCTTTGAGAATGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAGTTTGGTTCTACATGC
R:
AGGATGACCCAGTCCCAAGTG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]