DreEX6044469 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20211933-20238876:-
Coord C1 exon
chr20:20238748-20238876
Coord A exon
chr20:20216726-20216841
Coord C2 exon
chr20:20211933-20212325
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACCATTTTTGTGGTTGCAGGAT
3' ss Score
7.48
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAACACCTGTATGGCTCCATATGCAGGTGGCCCCCATCAGGAACGAGAATGATAAGGTGGTCCTGTTCCTCTGCACTTTCAAGGATATCACTGTCTTCAAGCAGCCCATAGAAGATGAGACCACCAGAG
Seq A exon
GATGGACCAAGTTTGCCAGGCTGACCAGGGCATTAACCAACAGCCGAGGTACGGTTCAGCAGCTCACCCCCATGAACAAGACTGAAGTCAGTCACAAGCATTCACGACTGGCAGAG
Seq C2 exon
GCTCTTCAACTGGGCTCCGACATTCTCCCTCAATATAAGCAAGAGGCTCCTAAAACTCCACCTCATATTATATTGCACTACTGCACCTTTAAGACCACTTGGGACTGGGTTATTCTCATCCTCACCTTCTACACAGCCATCATGGTGCCCTACAATGTGTCTTTTAAGACCAAGCAGAACAACCTGGTGTGGTTGGTACTGGACAGCGTGGTGGATGTCATCTTCCTAGTGGATATTGTGTTGAACTTTCATACAACTTTTGTGGGACCTGGAGGAGAGGTCATATCTGACCCAAAGCTTATACGCATGAACTACTTGAAGACCTGGTTTGTCATAGACCTGCTGTCCTGTCTACCCTATGACATCATCAATGCCTTTGAAAACGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.7=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(25.9=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCTTCAAGCAGCCCAT
R:
GCTGTCCAGTACCAACCACAC
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]