MmuEX6081554 @ mm9
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:76215178-76232013:-
Coord C1 exon
chr12:76231885-76232013
Coord A exon
chr12:76220908-76221023
Coord C2 exon
chr12:76215178-76215570
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCATCTTTTGAAGGTT
3' ss Score
10.33
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTACCCCTGTTTGGTTTTACATGCAAATCGCACCAATAAGAAATGAACACGAGAAGGTGGTCTTGTTCCTGTGTACATTCAAGGACATTACACTGTTCAAACAGCCTATAGAGGATGACTCAACGAAAG
Seq A exon
GTTGGACGAAGTTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAGCATTCAAGACTAGCTGAA
Seq C2 exon
GTGCTTCAGCTGGGATCAGACATCCTTCCTCAGTACAAACAAGAAGCGCCAAAGACGCCACCACATATCATCTTACACTATTGTGCTTTTAAAACTACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATCATGGTTCCTTACAATGTTTCTTTCAAAACAAAGCAGAACAATATCGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTGATTTTTCTGGTGGACATTGTTTTAAATTTTCACACGACTTTTGTGGGGCCGGGTGGAGAGGTCATTTCTGACCCGAAGCTTATAAGGATGAACTATCTGAAAACTTGGTTTGTGATTGATCTGCTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGAACACGAGAAGGTGGT
R:
GTAAGGAACCATGATGGCGGT
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: