BtaEX6054414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75561040-75587633:-
Coord C1 exon
chr10:75587505-75587633
Coord A exon
chr10:75573425-75573540
Coord C2 exon
chr10:75561040-75561432
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTTATTTTTAAGGTT
3' ss Score
12.07
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAACCCCTGTTTGGTTTTATATGCAAATTGCACCGATAAGAAATGAACATGAAAAGGTGGTTTTGTTCCTATGCACTTTCAAGGATATTACGTTGTTCAAACAGCCAATAGAGGATGATTCAACAAAAG
Seq A exon
GTTGGACAAAATTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTGCAACAGCTCACGCCAATGAATAAAACAGAGGTGGTCCACAAACATTCAAGACTAGCTGAA
Seq C2 exon
GTTCTTCAGCTGGGATCAGATATCCTTCCTCAGTATAAGCAAGAAGCGCCAAAGACGCCACCACACATTATTTTACACTATTGTGCTTTTAAAACAACTTGGGATTGGGTGATTTTAATTCTTACCTTCTACACCGCCATTATGGTTCCTTACAACGTCTCCTTCAAAACGAAGCAGAACAACATAGCCTGGCTGGTGCTGGACAGTGTGGTGGACGTTATTTTTCTGGTTGACATTGTTTTAAATTTTCACACAACCTTTGTGGGACCTGGTGGAGAGGTTATTTCTGACCCCAAGTTGATAAGGATGAACTATCTGAAAACTTGGTTTGTGATCGATCTGTTGTCTTGTTTACCTTATGACATCATCAATGCCTTTGAAAATGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(28.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.7=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAAACAGCCAATAGAGGA
R:
TAACGTCCACCACACTGTCCA
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]