RnoEX6029000 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:98102728-98119812:-
Coord C1 exon
chr6:98119706-98119812
Coord A exon
chr6:98113248-98113376
Coord C2 exon
chr6:98102728-98102843
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTCTCCACTGCAGGTA
3' ss Score
12
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAACTGACCGATAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTATAAAAAAAACC
Seq A exon
GTACCCCCGTTTGGTTTTACATGCAAATTGCACCAATAAGAAACGAACACGAGAAGGTGGTCTTGTTCCTGTGTACGTTCAAGGATATCACGCTGTTCAAACAGCCCATAGAGGATGACTCAACAAAAG
Seq C2 exon
GTTGGACGAAATTTGCCCGGTTGACACGGGCTTTGACAAACAGCCGGAGTGTGTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAACATTCAAGACTGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'1-9,'1-2,4-9=AN
Average complexity
A_C3
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
PF134261=PAS_9=PD(28.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGTGCACAACTTCACA
R:
GGTTCCTGGAGAATGAGTTTGCA
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]