GgaEX6039306 @ galGal3
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
NA
Coordinates
chr5:56060625-56078566:+
Coord C1 exon
chr5:56060625-56060731
Coord A exon
chr5:56064777-56064905
Coord C2 exon
chr5:56078451-56078566
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTTTTCTGCTCCAGGAA
3' ss Score
11.99
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTTATGTATGGTGAACTGACAGACAAGAAGACCATTGAAAAAGTCAGACAGACTTTCGACAACTATGAGTCAAACTGCTTCGAAATTCTCCTCTACAAGAAAAACA
Seq A exon
GAACCCCAGTTTGGTTCTACATGCAAATCGCTCCTATAAGAAATGAGCATGAAAAAGTGGTTTTGTTCCTGTGCACTTTTAAGGATATCACTTTGTTCAAGCAGCCAATAGAAGATGATTCAACAAAAG
Seq C2 exon
GTTGGACCAAGTTCGCACGGTTGACACGGGCCTTGACGAACAGTCGGAGTGTGCTGCAGCAGCTGACGCCGATGAACAAAGCCGAGGTGGTGCACAAGCATTCCCGCCTGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
PF134261=PAS_9=PD(28.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGGTGAACTGACAGACAAGA
R:
TTCAGCCAGGCGGGAATG
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]