MmuEX6081553 @ mm9
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:76220908-76238737:-
Coord C1 exon
chr12:76238631-76238737
Coord A exon
chr12:76231885-76232013
Coord C2 exon
chr12:76220908-76221023
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTTTCTCCCCTACAGGTA
3' ss Score
13.83
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAACTGACCGACAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTACAAAAAAAACC
Seq A exon
GTACCCCTGTTTGGTTTTACATGCAAATCGCACCAATAAGAAATGAACACGAGAAGGTGGTCTTGTTCCTGTGTACATTCAAGGACATTACACTGTTCAAACAGCCTATAGAGGATGACTCAACGAAAG
Seq C2 exon
GTTGGACGAAGTTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTACAGCAGCTTACACCAATGAATAAAACAGAGACAGTCCACAAGCATTCAAGACTAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
PF134261=PAS_9=PD(28.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATGGAGAACTGACCGACA
R:
TCAGCTAGTCTTGAATGCTTGTGG
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: