BtaEX6054413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75573425-75592528:-
Coord C1 exon
chr10:75592422-75592528
Coord A exon
chr10:75587505-75587633
Coord C2 exon
chr10:75573425-75573540
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTCTCTCTTTTCCAGGAA
3' ss Score
13.25
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTTTATGTATGGAGAATTGACTGACAAAAAAACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGCTTTGAAGTTCTCTTGTACAAGAAAAACA
Seq A exon
GAACCCCTGTTTGGTTTTATATGCAAATTGCACCGATAAGAAATGAACATGAAAAGGTGGTTTTGTTCCTATGCACTTTCAAGGATATTACGTTGTTCAAACAGCCAATAGAGGATGATTCAACAAAAG
Seq C2 exon
GTTGGACAAAATTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTGCAACAGCTCACGCCAATGAATAAAACAGAGGTGGTCCACAAACATTCAAGACTAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'3-5,'3-3,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
PF134261=PAS_9=PD(28.2=70.5)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000015122fB3551
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGGAGAATTGACTGACAAAAA
R:
TTCAGCTAGTCTTGAATGTTTGTGGA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]