HsaEX6071632 @ hg19
Exon Skipping
Gene
ENSG00000140015 | KCNH5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:HGNC Symbol;Acc:6254]
Coordinates
chr14:63453790-63473190:-
Coord C1 exon
chr14:63473084-63473190
Coord A exon
chr14:63468049-63468177
Coord C2 exon
chr14:63453790-63453905
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCAACTTCTTTCTGTTACAGGAA
3' ss Score
11.16
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTTTATGTATGGGGAATTGACTGACAAGAAGACCATTGAGAAAGTCAGGCAAACTTTTGACAACTACGAATCAAACTGCTTTGAAGTTCTTCTGTACAAGAAAAACA
Seq A exon
GAACCCCTGTTTGGTTTTATATGCAAATTGCACCAATAAGAAATGAACATGAAAAGGTGGTCTTGTTCCTGTGTACTTTCAAGGATATTACGTTGTTCAAACAGCCAATAGAGGATGATTCAACAAAAG
Seq C2 exon
GTTGGACGAAATTTGCCCGATTGACACGGGCTTTGACAAATAGCCGAAGTGTTTTGCAGCAGCTCACGCCAATGAATAAAACAGAGGTGGTCCATAAACATTCAAGACTAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140015-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(32.7=100)
A:
PF134261=PAS_9=PD(28.2=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATGGGGAATTGACTGACA
R:
TCAGCTAGTCTTGAATGTTTATGGAC
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)