DreEX6044468 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20216726-20243996:-
Coord C1 exon
chr20:20243890-20243996
Coord A exon
chr20:20238748-20238876
Coord C2 exon
chr20:20216726-20216841
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCCATGCGGTGCTGTCAGGAA
3' ss Score
4.61
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTTCATGTACGGCGAGCTGACAGACAAGAAGACAATAGACAAAGTCAGACAGACCTTTGATAACTATGAGTCCAATTGCTTTGAAGTGCTGCTCTATAAGAAGAACA
Seq A exon
GAACACCTGTATGGCTCCATATGCAGGTGGCCCCCATCAGGAACGAGAATGATAAGGTGGTCCTGTTCCTCTGCACTTTCAAGGATATCACTGTCTTCAAGCAGCCCATAGAAGATGAGACCACCAGAG
Seq C2 exon
GATGGACCAAGTTTGCCAGGCTGACCAGGGCATTAACCAACAGCCGAGGTACGGTTCAGCAGCTCACCCCCATGAACAAGACTGAAGTCAGTCACAAGCATTCACGACTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(33.3=100)
A:
PF134261=PAS_9=PD(28.7=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATGTACGGCGAGCTGAC
R:
CTCTGCCAGTCGTGAATGCTT
Band lengths:
223-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]