DreEX6062709 @ danRer10
Exon Skipping
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37244155-37249892:-
Coord C1 exon
chr13:37249786-37249892
Coord A exon
chr13:37247006-37247134
Coord C2 exon
chr13:37244155-37244273
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGACCTCTGACCTCTTACAGGAA
3' ss Score
8.22
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
TTTTATGTATGGGGAGCTGACAGACAAGAAGACCATAGACAAGGTGCGACAGGCCTTTGACAACTATGAGTCCAACTGCTTTGAAGTTCTGCTGTACAGAAAGAACA
Seq A exon
GAACCCCGGTTTGGTTCTACATGCAGATAGCGCCAATCCGCAATGAAAATGACAAAGTGGTTCTGTTCCTGTGTACATTTAAGGACATCACCGTCTTTAAACAGCCTATTGAAGATGAAAGCACCCGGG
Seq C2 exon
GTTGGACCAAGTTTGCACGTTTGACTCGAGCGTTGACCAACAGCAAAAGCACCATTCAGCAGATCACGCCTGTCAGCAGAACCGACGTCACGTCACACAAACCCTCCAGACTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(33.0=100)
A:
PF134261=PAS_9=PD(28.4=70.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTATGTATGGGGAGCTGACAGAC
R:
CTCTGCAAGTCTGGAGGGTTT
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]