DreEX0040892 @ danRer10
Exon Skipping
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37247006-37255001:-
Coord C1 exon
chr13:37254878-37255001
Coord A exon
chr13:37249786-37249892
Coord C2 exon
chr13:37247006-37247134
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTGAATAACCTGTCTGTAGTTT
3' ss Score
2.69
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGACAAGTTTCTTGCTGGGAAACGCTCAGATTGTGGACTGGCCTGTAGTTTACAGTAATGACGGCTTCTGCAAGCTGTCTGGATACCACAGAGCAGAGGTCATGCAGAAGAGCAGCACATGCAG
Seq A exon
TTTTATGTATGGGGAGCTGACAGACAAGAAGACCATAGACAAGGTGCGACAGGCCTTTGACAACTATGAGTCCAACTGCTTTGAAGTTCTGCTGTACAGAAAGAACA
Seq C2 exon
GAACCCCGGTTTGGTTCTACATGCAGATAGCGCCAATCCGCAATGAAAATGACAAAGTGGTTCTGTTCCTGTGTACATTTAAGGACATCACCGTCTTTAAACAGCCTATTGAAGATGAAAGCACCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(37.6=97.6)
A:
PF134261=PAS_9=FE(33.0=100)
C2:
PF134261=PAS_9=PD(28.4=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGGGAAACGCTCAGAT
R:
CCCGGGTGCTTTCATCTTCAA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]