MmuEX0025041 @ mm10
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:75130898-75154281:-
Coord C1 exon
chr12:75154158-75154281
Coord A exon
chr12:75137644-75137750
Coord C2 exon
chr12:75130898-75131026
Length
107 bp
Sequences
Splice sites
3' ss Seq
AACAGGCTTTTCTCTTCCAGTTT
3' ss Score
8.05
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AATCAAGTTTCTTACTGGGAAATGCCCAAATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGTTTTTGTAAACTCTCTGGATATCATCGAGCTGACGTCATGCAGAAAAGCAGCACCTGCAG
Seq A exon
TTTTATGTATGGAGAACTGACCGACAAGAAGACCATTGAGAAAGTCAGGCAGACTTTTGACAACTACGAGTCAAACTGTTTTGAAGTTCTTCTGTACAAAAAAAACC
Seq C2 exon
GTACCCCTGTTTGGTTTTACATGCAAATCGCACCAATAAGAAATGAACACGAGAAGGTGGTCTTGTTCCTGTGTACATTCAAGGACATTACACTGTTCAAACAGCCTATAGAGGATGACTCAACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'2-2,'2-1,3-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(37.3=100)
A:
PF134261=PAS_9=FE(32.7=100)
C2:
PF134261=PAS_9=PD(28.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTCTTACTGGGAAATGCC
R:
TCGTTGAGTCATCCTCTATAGGCT
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types