GgaEX1031291 @ galGal4
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXK7]
Coordinates
chr5:53420515-53432025:+
Coord C1 exon
chr5:53420515-53420638
Coord A exon
chr5:53427745-53427851
Coord C2 exon
chr5:53431897-53432025
Length
107 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTTTCTTTTTCAGTTT
3' ss Score
11.1
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
AATCCAGTTTTTTGTTGGGAAACGCCCAGATTGTGGACTGGCCTGTAGTTTATAGTAATGACGGATTTTGTAAACTCTCTGGATATCATCGCGCCGACGTCATGCAGAAAAGTAGCACTTGCAG
Seq A exon
TTTTATGTATGGTGAACTGACAGACAAGAAGACCATTGAAAAAGTCAGACAGACTTTCGACAACTATGAGTCAAACTGCTTCGAAATTCTCCTCTACAAGAAAAACA
Seq C2 exon
GAACCCCAGTTTGGTTCTACATGCAAATCGCTCCTATAAGAAATGAGCATGAAAAAGTGGTTTTGTTCCTGTGCACTTTTAAGGATATCACTTTGTTCAAGCAGCCAATAGAAGATGATTCAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=FE(37.3=100)
A:
PF134261=PAS_9=FE(32.7=100)
C2:
PF134261=PAS_9=PD(28.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATTGTGGACTGGCCTGTA
R:
TTTTGTTGAATCATCTTCTATTGGCT
Band lengths:
226-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]